PH01000343G0840's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT2G44950 : 2.10E-32
Blast annotation: histone mono-ubiquitination 1
2.Location
Scaffold: PH01000343
Strand: -
| Region | Start | End |
| gene | 601591 | 607741 |
| mRNA | 601591 | 607741 |
| exon | 601591 | 603072 |
| exon | 603367 | 603532 |
| exon | 603622 | 603824 |
| exon | 603912 | 604049 |
| exon | 604790 | 604849 |
| exon | 607051 | 607741 |
| CDS | 602950 | 603072 |
| CDS | 603367 | 603532 |
| CDS | 603622 | 603824 |
| CDS | 603912 | 604049 |
| CDS | 604790 | 604849 |
| CDS | 607051 | 607518 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000837 | glutamyl-tRNA aminoacylation, guanosine tetraphosphate metabolic process, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism glutamate-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA binding, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001401 | Plant_hormone_signal_transduction bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001402 | phosphatidylinositol-mediated signaling, RNA 3'-end processing, RNA polyadenylation, phosphatidylinositol_biosynthetic_process phosphatidylinositol phosphorylation, 1-phosphatidylinositol_4-kinase_activity Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system mRNA_surveillance_pathway polynucleotide adenylyltransferase activity, |
| coexpression network | CFinderM001650 | sphingolipid metabolic process, oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, glucosylceramidase activity, Butanoate_metabolism Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis serine-type carboxypeptidase activity, nucleotidyltransferase activity, |
| coexpression network | CFinderM001675 | GT47 GlycosylTransferases dephosphorylation, Butanoate_metabolism oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.