PH01000474G0310's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G03250 : 6.00E-70
Blast annotation: -
2.Location
Scaffold: PH01000474
Strand: +
| Region | Start | End |
| gene | 215335 | 218793 |
| mRNA | 215335 | 218793 |
| exon | 215335 | 215825 |
| exon | 215926 | 215996 |
| exon | 216306 | 216444 |
| exon | 216904 | 216986 |
| exon | 218242 | 218349 |
| exon | 218455 | 218793 |
| CDS | 215759 | 215825 |
| CDS | 215926 | 215996 |
| CDS | 216306 | 216444 |
| CDS | 216904 | 216986 |
| CDS | 218242 | 218349 |
| CDS | 218455 | 218604 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001019 | protein transport, |
| coexpression network | CFinderM001086 | Pantothenate_and_CoA_biosynthesis tRNA processing, methyltransferase activity, |
| coexpression network | CFinderM001105 | Endocytosis pseudouridine synthesis, RNA modification, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding pseudouridine synthase activity, |
| coexpression network | CFinderM001106 | Endocytosis |
| coexpression network | CFinderM001761 | large ribosomal subunit, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13902.5 | R3H-assoc | 33 | 152 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.