PH01000004G3200's details annotation
1.Annotation
ICBR annotation: prolipoprotein diacylglyceryl transferase, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000004
Strand: -
| Region | Start | End |
| gene | 2014758 | 2020688 |
| mRNA | 2014758 | 2020688 |
| exon | 2014758 | 2014983 |
| exon | 2015332 | 2015523 |
| exon | 2017945 | 2020688 |
| CDS | 2014930 | 2014983 |
| CDS | 2015332 | 2015523 |
| CDS | 2017945 | 2018676 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity, pyrophosphatase_activity CMGC_GSK (from iTAK) protein-arginine_deiminase_activity |
| coexpression network | CFinderM000909 | Homologous_recombination DNA_replication Mismatch_repair histone-lysine N-methyltransferase activity, single-stranded DNA binding, Golgi vesicle transport, |
| coexpression network | CFinderM001019 | protein transport, |
| coexpression network | CFinderM001105 | Endocytosis pseudouridine synthesis, RNA modification, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding pseudouridine synthase activity, |
| coexpression network | CFinderM001106 | Endocytosis |
| coexpression network | CFinderM001583 | endoplasmic reticulum, bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001875 | histone deacetylation, histone deacetylase activity, DNA_replication Mismatch_repair Nucleotide_excision_repair DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.