Annotation of co-expression genes

PH01002230G0270's details annotation

1.Annotation

ICBR annotation: flowering time control protein FCA, putative, expressed

Blast result AT4G16280 : 5.10E-90
Blast annotation: RNA binding;abscisic acid binding

2.Location

Scaffold: PH01002230
Strand: -

RegionStartEnd
gene217388228925
mRNA217388228925
exon217388217956
exon218491218569
exon218629218688
exon219222219431
exon219612219689
exon219901220461
exon220561220638
exon220720220879
exon221899221961
exon222106222170
exon222247222326
exon222411222477
exon222691222758
exon223127223178
exon223259223341
exon226386226464
exon226980227050
exon227404228925
CDS217952217956
CDS218491218569
CDS218629218688
CDS219222219431
CDS219612219689
CDS219901220461
CDS220561220638
CDS220720220879
CDS221899221961
CDS222106222170
CDS222247222326
CDS222411222477
CDS222691222758
CDS223127223178
CDS223259223341
CDS226386226464
CDS226980227050
CDS227404227428

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000013cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
response to oxidative stress,
extracellular polysaccharide biosynthetic process,
hydrolase activity, hydrolyzing O-glycosyl compounds,
carbohydrate metabolic process,
coexpression networkCFinderM000372Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
L-phenylalanine biosynthetic process,
regulation of ARF GTPase activity,
Endocytosis
coexpression networkCFinderM000783carbohydrate metabolic process,
CE13 Carbohydrate_Esterases
hydrolase activity, hydrolyzing O-glycosyl compounds,
coexpression networkCFinderM001027RLK-Pelle_SD-2b (from iTAK)
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
Methane_metabolism
coexpression networkCFinderM001073
coexpression networkCFinderM001114MYB Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001135
coexpression networkCFinderM001136regulation of ARF protein signal transduction,
DNA integration,
ARF guanyl-nucleotide exchange factor activity,
coexpression networkCFinderM001196nitronate monooxygenase activity,
intramolecular transferase activity,
coexpression networkCFinderM001255GT77 GlycosylTransferases
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
succinate-CoA ligase (ADP-forming) activity,
ATP citrate synthase activity,
Carbon_fixation_pathways_in_prokaryotes
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer,
prephenate dehydratase activity,
Citrate_cycle_(TCA_cycle)
coexpression networkCFinderM001475cellulose biosynthetic process,
intramolecular transferase activity,
coexpression networkCFinderM001784RLK-Pelle_RLCK-V (from iTAK)
COPI vesicle coat,
membrane coat,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_11983
PF00076.21RRM_1110174

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.