LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE005727

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE005727

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE005727AT3G52970.1cytochrome P450, family 76, subfamily G, polypeptide 11positive
GWHGAAZE006212AT4G22590.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.71negative
GWHGAAZE023207AT3G18990.1AP2/B3-like transcriptional factor family protein-0.69negative
GWHGAAZE016368AT1G10070.2branched-chain amino acid transaminase 2-0.66negative
GWHGAAZE032753AT4G15560.1Deoxyxylulose-5-phosphate synthase-0.65negative
GWHGAAZE008929AT2G36090.1F-box family protein-0.65negative
GWHGAAZE010911AT5G39530.1Protein of unknown function (DUF1997)-0.65negative
GWHGAAZE018114AT3G24090.1glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases-0.64negative
GWHGAAZE025068AT1G02090.1Proteasome component (PCI) domain protein-0.64negative
GWHGAAZE026827AT1G06290.1acyl-CoA oxidase 3-0.64negative
GWHGAAZE010942AT1G10830.215-cis-zeta-carotene isomerase-0.64negative
GWHGAAZE009574AT3G25110.1fatA acyl-ACP thioesterase-0.64negative
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 1-0.64negative
GWHGAAZE015882AT1G21920.1Histone H3 K4-specific methyltransferase SET7/9 family protein-0.64negative
GWHGAAZE031973AT3G05210.1nucleotide repair protein, putative-0.63negative
GWHGAAZE018882AT5G49950.1alpha/beta-Hydrolases superfamily protein-0.63negative
GWHGAAZE031238AT1G02130.1RAS 5-0.63negative
GWHGAAZE014864AT5G66450.2Phosphatidic acid phosphatase (PAP2) family protein-0.63negative
GWHGAAZE015039AT4G35510.1PHD finger-like protein;(source:Araport11)-0.63negative
GWHGAAZE004807AT5G28237.1Pyridoxal-5'-phosphate-dependent enzyme family protein-0.63negative
GWHGAAZE001672AT5G16440.1isopentenyl diphosphate isomerase 1-0.63negative
GWHGAAZE025220AT3G63470.1serine carboxypeptidase-like 40-0.63negative
GWHGAAZE000665AT5G05580.1fatty acid desaturase 8-0.63negative
GWHGAAZE010941AT1G10830.115-cis-zeta-carotene isomerase-0.63negative
GWHGAAZE023847-----0.62negative
GWHGAAZE005860AT1G01050.1pyrophosphorylase 1-0.62negative
GWHGAAZE033819AT1G09310.1Protein of unknown function, DUF538-0.62negative
GWHGAAZE022613AT2G01260.1Protein of unknown function (DUF789)-0.62negative
GWHGAAZE012173AT4G15563.1F-box-like protein;(source:Araport11)-0.62negative
GWHGAAZE013965AT1G19640.1jasmonic acid carboxyl methyltransferase-0.62negative
GWHGAAZE000384AT2G33310.2auxin-induced protein 13-0.62negative
GWHGAAZE000650AT5G05580.1fatty acid desaturase 8-0.62negative
GWHGAAZE007586AT2G17760.1Eukaryotic aspartyl protease family protein-0.61negative
GWHGAAZE010955AT5G39530.1Protein of unknown function (DUF1997)-0.61negative
GWHGAAZE015168AT4G15560.1Deoxyxylulose-5-phosphate synthase-0.61negative
GWHGAAZE016177AT5G09360.1laccase 14-0.61negative
GWHGAAZE011697AT1G08970.4nuclear factor Y, subunit C9-0.61negative
GWHGAAZE000986AT4G05160.1AMP-dependent synthetase and ligase family protein-0.61negative
GWHGAAZE020582AT1G08760.1Plant protein of unknown function (DUF936)-0.61negative
GWHGAAZE032950AT5G26030.2ferrochelatase 1-0.61negative
GWHGAAZE020925AT1G05680.1Uridine diphosphate glycosyltransferase 74E2-0.61negative
GWHGAAZE025552AT1G80160.2Lactoylglutathione lyase / glyoxalase I family protein-0.61negative
GWHGAAZE013159AT2G37250.1adenosine kinase-0.61negative
GWHGAAZE015166AT4G39330.1cinnamyl alcohol dehydrogenase 9-0.61negative
GWHGAAZE015202AT5G65380.1MATE efflux family protein-0.6negative
GWHGAAZE002340AT3G21690.1MATE efflux family protein-0.6negative
GWHGAAZE026945AT1G11740.1ankyrin repeat family protein-0.6negative
GWHGAAZE000560AT1G06840.1Leucine-rich repeat protein kinase family protein-0.6negative
GWHGAAZE009607AT2G33150.1peroxisomal 3-ketoacyl-CoA thiolase 3-0.6negative
GWHGAAZE032774AT4G39330.1cinnamyl alcohol dehydrogenase 9-0.6negative
GWHGAAZE032485AT3G12150.1alpha/beta hydrolase family protein;(source:Araport11)-0.6negative
GWHGAAZE007195AT3G55290.2NAD(P)-binding Rossmann-fold superfamily protein-0.6negative
GWHGAAZE023895AT1G71960.1ATP-binding casette family G25-0.6negative
GWHGAAZE028079AT4G19460.1UDP-Glycosyltransferase superfamily protein-0.6negative
GWHGAAZE011901AT1G08970.4nuclear factor Y, subunit C9-0.6negative
GWHGAAZE014593AT3G19270.1cytochrome P450, family 707, subfamily A, polypeptide 4-0.59negative
GWHGAAZE030764AT5G50700.1hydroxysteroid dehydrogenase 1-0.59negative
GWHGAAZE028398AT2G26040.1PYR1-like 2-0.59negative
GWHGAAZE010986AT1G10830.215-cis-zeta-carotene isomerase-0.59negative
GWHGAAZE008933AT2G36090.1F-box family protein-0.59negative
GWHGAAZE024940AT1G12600.1UDP-N-acetylglucosamine (UAA) transporter family-0.59negative
GWHGAAZE023781AT2G22590.1UDP-Glycosyltransferase superfamily protein-0.59negative
GWHGAAZE027634AT1G62990.1KNOTTED-like homeobox of Arabidopsis thaliana 7-0.59negative
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein-0.59negative
GWHGAAZE030596AT5G62680.1Major facilitator superfamily protein-0.59negative
GWHGAAZE023896AT1G71960.1ATP-binding casette family G25-0.59negative
GWHGAAZE030090AT5G17540.1HXXXD-type acyl-transferase family protein-0.59negative
GWHGAAZE020599AT2G22330.1cytochrome P450, family 79, subfamily B, polypeptide 3-0.58negative
GWHGAAZE023782AT2G22590.1UDP-Glycosyltransferase superfamily protein-0.58negative
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein-0.58negative
GWHGAAZE026718AT2G39420.1alpha/beta-Hydrolases superfamily protein-0.58negative
GWHGAAZE000642AT2G30040.1mitogen-activated protein kinase kinase kinase 14-0.58negative
GWHGAAZE023779AT5G65550.1UDP-Glycosyltransferase superfamily protein-0.58negative
GWHGAAZE005441AT2G38060.1phosphate transporter 4;2-0.58negative
GWHGAAZE003636AT1G35910.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.58negative
GWHGAAZE023777AT5G12010.1nuclease;(source:Araport11)-0.58negative
GWHGAAZE000868AT3G26540.1Tetratricopeptide repeat (TPR)-like superfamily protein-0.58negative
GWHGAAZE013027AT2G38110.1glycerol-3-phosphate acyltransferase 6-0.58negative
GWHGAAZE026119AT4G31780.2monogalactosyl diacylglycerol synthase 1-0.58negative
GWHGAAZE012998AT3G51840.1acyl-CoA oxidase 4-0.58negative
GWHGAAZE003257-----0.58negative
GWHGAAZE009276-----0.58negative
GWHGAAZE024117AT1G77280.1Protein kinase protein with adenine nucleotide alpha hydrolases-like domain-0.58negative
GWHGAAZE014829AT5G25620.2Flavin-binding monooxygenase family protein-0.58negative
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 1-0.58negative
GWHGAAZE010985AT1G10830.115-cis-zeta-carotene isomerase-0.58negative
GWHGAAZE020602AT5G35917.1cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene-0.58negative
GWHGAAZE028453AT3G20250.1pumilio 5-0.58negative
GWHGAAZE014322AT1G34780.1APR-like 4-0.58negative
GWHGAAZE015066AT1G76490.1hydroxy methylglutaryl CoA reductase 1-0.58negative
GWHGAAZE029487AT2G02370.2SNARE associated Golgi protein family-0.58negative
GWHGAAZE033793AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 2-0.58negative
GWHGAAZE032243AT4G15560.1Deoxyxylulose-5-phosphate synthase-0.58negative
GWHGAAZE032015AT4G15560.1Deoxyxylulose-5-phosphate synthase-0.58negative
GWHGAAZE012920-----0.58negative
GWHGAAZE009597AT3G07090.1PPPDE putative thiol peptidase family protein-0.57negative
GWHGAAZE030188AT4G38620.1myb domain protein 4-0.57negative
GWHGAAZE020600AT5G05260.1cytochrome p450 79a2-0.57negative
GWHGAAZE009563AT3G25160.1ER lumen protein retaining receptor family protein-0.57negative
GWHGAAZE031914AT3G59030.1MATE efflux family protein-0.57negative
GWHGAAZE028415AT5G26030.2ferrochelatase 1-0.57negative
GWHGAAZE015248AT4G29840.1Pyridoxal-5'-phosphate-dependent enzyme family protein-0.57negative
GWHGAAZE023964AT1G36940.1myotubularin-like protein;(source:Araport11)-0.57negative
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)-0.57negative
GWHGAAZE023882AT1G75280.1NmrA-like negative transcriptional regulator family protein-0.57negative
GWHGAAZE025451AT3G02040.1senescence-related gene 3-0.57negative
GWHGAAZE030766AT5G50700.1hydroxysteroid dehydrogenase 1-0.57negative
GWHGAAZE015247AT5G35460.1membrane protein;(source:Araport11)-0.57negative
GWHGAAZE012588AT5G04250.2Cysteine proteinases superfamily protein-0.57negative
GWHGAAZE010959AT5G39530.1Protein of unknown function (DUF1997)-0.57negative
GWHGAAZE010940AT1G10830.115-cis-zeta-carotene isomerase-0.57negative
GWHGAAZE023793AT1G14560.1Mitochondrial substrate carrier family protein-0.57negative
GWHGAAZE014135AT3G16150.1N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein-0.57negative
GWHGAAZE024730AT3G06350.1dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative-0.57negative
GWHGAAZE005859AT2G36090.1F-box family protein-0.57negative
GWHGAAZE033142AT5G15240.1Transmembrane amino acid transporter family protein-0.57negative
GWHGAAZE004884AT4G22260.1Alternative oxidase family protein-0.57negative
GWHGAAZE006712AT5G46240.1potassium channel in Arabidopsis thaliana 1-0.57negative
GWHGAAZE014197AT3G30390.2Transmembrane amino acid transporter family protein-0.57negative
GWHGAAZE000983AT3G10410.1SERINE CARBOXYPEPTIDASE-LIKE 49-0.57negative
GWHGAAZE012652AT4G10430.3TMPIT-like protein-0.57negative
GWHGAAZE014285AT2G36690.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein-0.57negative
GWHGAAZE027631AT4G11820.2hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase-0.57negative
GWHGAAZE019720AT5G65940.2beta-hydroxyisobutyryl-CoA hydrolase 1-0.57negative
GWHGAAZE031952AT1G54710.1homolog of yeast autophagy 18 (ATG18) H-0.57negative
GWHGAAZE020923AT1G05690.1BTB and TAZ domain protein 3-0.57negative
GWHGAAZE008921AT2G27310.1F-box family protein-0.57negative
GWHGAAZE005288AT5G01990.1Auxin efflux carrier family protein-0.56negative
GWHGAAZE027059-----0.56negative
GWHGAAZE007687AT2G17480.1Seven transmembrane MLO family protein-0.56negative
GWHGAAZE007756AT5G37550.1hypothetical protein;(source:Araport11)-0.56negative
GWHGAAZE010951AT5G39530.1Protein of unknown function (DUF1997)-0.56negative
GWHGAAZE030858AT2G32070.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein-0.56negative
GWHGAAZE028407AT2G26040.1PYR1-like 2-0.56negative
GWHGAAZE020583AT1G08760.1Plant protein of unknown function (DUF936)-0.56negative
GWHGAAZE010917AT5G39530.1Protein of unknown function (DUF1997)-0.56negative
GWHGAAZE008133AT1G60690.1NAD(P)-linked oxidoreductase superfamily protein-0.56negative
GWHGAAZE020611AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 2-0.56negative
GWHGAAZE007938AT4G39380.2TSL-kinase interacting-like protein;(source:Araport11)-0.56negative
GWHGAAZE032292AT1G64940.1cytochrome P450, family 87, subfamily A, polypeptide 6-0.56negative
GWHGAAZE014540AT2G23450.2Protein kinase superfamily protein-0.56negative
GWHGAAZE005722AT3G52990.1Pyruvate kinase family protein-0.56negative
GWHGAAZE003073AT1G48850.1chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative-0.56negative
GWHGAAZE033552AT5G57360.1Galactose oxidase/kelch repeat superfamily protein-0.56negative
GWHGAAZE020613AT2G22330.1cytochrome P450, family 79, subfamily B, polypeptide 3-0.56negative
GWHGAAZE031972AT3G05200.1RING/U-box superfamily protein-0.56negative
GWHGAAZE002176AT2G20680.1Glycosyl hydrolase superfamily protein-0.56negative
GWHGAAZE004154AT5G03990.1FK506-binding-like protein;(source:Araport11)-0.56negative
GWHGAAZE020610AT1G53840.1pectin methylesterase 1-0.56negative
GWHGAAZE011057AT4G13730.1Ypt/Rab-GAP domain of gyp1p superfamily protein-0.56negative
GWHGAAZE009047AT2G28200.1C2H2-type zinc finger family protein-0.56negative
GWHGAAZE008243AT3G12120.2fatty acid desaturase 2-0.56negative
GWHGAAZE018738AT1G22370.2UDP-glucosyl transferase 85A5-0.56negative
GWHGAAZE006328AT3G03000.1EF hand calcium-binding protein family-0.56negative
GWHGAAZE009268AT2G29190.2pumilio 2-0.56negative
GWHGAAZE023511AT1G10140.1Uncharacterised conserved protein UCP031279-0.56negative
GWHGAAZE023940AT1G34340.1alpha/beta-Hydrolases superfamily protein-0.56negative
GWHGAAZE008554AT2G26930.14-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase-0.56negative


Expression profiling, GSEA and motif analysis